After updating Perl on Windows, locate Mascot Server in the programs and features section of the Windows control panel and choose Repair. If you encounter this error, the fix is to update to ActivePerl 5.14, as included on the Mascot Server 2.4 program CD. This check follows the same code path as the Database Manager functionality. If the results file does not store protein taxonomy data (new in 2.4), the report script checks whether the database is online for looking up taxonomy data. In 2.4.01 (but not 2.4.00), the same error may also occur when viewing the Peptide Summary or Protein Family Summary report. With Perl versions 5.8 or 5.10, if a predefined database definition is enabled in Database Manager but the download is cancelled, it is possible to get the following fatal errorĬannot handle date (00, 00, 00, 01, 0, 2070) at. Please refer to sequence database setup for databases of interest. The workaround is to download and extract the files manually. This is because the download URLs were changed from FTP to HTTP, and some third-party servers such as NCBI redirect HTTP to HTTPS, which Database Manager in Mascot 2.4 does not support. From November 2021, Database Manager is also unable to download files for most predefined definitions. The work-around is to download the Fasta file manually, as described here. Updating and upgrading procedures Known Issues Database ManagerÄatabase Manager cannot download Fasta files generated by Uniprot database queries, such as Uniprot proteomes.
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